Pseudomonas protegens Pf-5, PFL_4286 (tatD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4286
Name	tatD
Replicon	chromosome
Genomic location	4981500 - 4982306 (+ strand)

Cross-References

RefSeq	YP_261378.1
GI	70731637
EC Number	3.1.21.-
Entrez	3478410
INSDC	AAY93542.1
NCBI Locus Tag	PFL_4286
UniParc	UPI000054DBB0
UniProtKB Acc	Q4K8Q5
UniProtKB ID	Q4K8Q5_PSEF5
UniRef100	UniRef100_Q4K8Q5
UniRef50	UniRef50_B5XYH5
UniRef90	UniRef90_Q4K8Q5

Product

Feature Type	CDS
Coding Frame	1
Product Name	deoxyribonuclease TatD
Synonyms
Evidence for Translation
Charge (pH 7)	-3.53
Kyte-Doolittle Hydrophobicity Value	-0.290
Molecular Weight (kDa)	30128.0
Isoelectric Point (pI)	6.44

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 625 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002703 (533 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4286 Search term: tatD Search term: deoxyribonuclease TatD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000287652 TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988] E-value: 7.9e-20 Percent Identity: 33.0
Ensembl 110, assembly GRCh38.p14	ENSP00000408736 TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988] E-value: 7.9e-20 Percent Identity: 33.0

References