Pseudomonas protegens Pf-5, PFL_4420

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4420
Name
Replicon chromosome
Genomic location 5130546 - 5131748 (- strand)

Cross-References

RefSeq YP_261508.1
GI 70731766
Entrez 3478539
INSDC AAY93671.1
NCBI Locus Tag PFL_4420
UniParc UPI000054DC32
UniProtKB Acc Q4K8C5
UniProtKB ID Q4K8C5_PSEF5
UniRef100 UniRef100_Q4K8C5
UniRef50 UniRef50_Q885W3
UniRef90 UniRef90_Q4K8C5

Product

Feature Type CDS
Coding Frame 1
Product Name
major facilitator family transporter
Synonyms
Evidence for Translation
Charge (pH 7) 9.36
Kyte-Doolittle Hydrophobicity Value 0.936
Molecular Weight (kDa) 42375.1
Isoelectric Point (pI) 10.21

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 250 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001231 (526 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4420

Human Homologs

References

No references are associated with this feature.