Pseudomonas protegens Pf-5, PFL_4437 (hda)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4437
Name
hda
Replicon chromosome
Genomic location 5145826 - 5146530 (- strand)

Cross-References

RefSeq YP_261525.1
GI 70731783
Entrez 3478556
INSDC AAY93688.1
NCBI Locus Tag PFL_4437
UniParc UPI000054DC43
UniProtKB Acc Q4K8A8
UniProtKB ID Q4K8A8_PSEF5
UniRef100 UniRef100_I4Y003
UniRef50 UniRef50_A0A024EHC9
UniRef90 UniRef90_A0A024EHC9

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA replication initiation factor
Synonyms
Evidence for Translation
Charge (pH 7) -2.13
Kyte-Doolittle Hydrophobicity Value -0.079
Molecular Weight (kDa) 26.5
Isoelectric Point (pI) 6.14

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 548 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000913 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4437
Search term: hda

Human Homologs

References

No references are associated with this feature.