Pseudomonas protegens Pf-5, PFL_4447 (rumA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4447
Name
rumA
Replicon chromosome
Genomic location 5156067 - 5157419 (- strand)

Cross-References

RefSeq YP_261535.1
GI 70731793
EC Number 2.1.1.-
Entrez 3478566
INSDC AAY93698.1
NCBI Locus Tag PFL_4447
UniParc UPI000054DC4D
UniProtKB Acc Q4K898
UniProtKB ID RLMD_PSEF5
UniRef100 UniRef100_Q4K898
UniRef50 UniRef50_Q4K898
UniRef90 UniRef90_Q4K898

Product

Feature Type CDS
Coding Frame 1
Product Name
23S rRNA m(5)U1939 methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) 1.69
Kyte-Doolittle Hydrophobicity Value -0.115
Molecular Weight (kDa) 49117.8
Isoelectric Point (pI) 7.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 552 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000899 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4447
Search term: rumA

Human Homologs

References

No references are associated with this feature.