Pseudomonas protegens Pf-5, PFL_4515

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_4515
Name
Replicon chromosome
Genomic location 5227053 - 5228273 (- strand)

Cross-References

RefSeq YP_261599.1
GI 70731857
EC Number 2.6.1.11
EC Number 2.6.1.17
Entrez 3478630
INSDC AAY93762.1
NCBI Locus Tag PFL_4515
UniParc UPI000054DC8B
UniProtKB Acc Q4K834
UniProtKB ID Q4K834_PSEF5
UniRef100 UniRef100_Q4K834
UniRef50 UniRef50_P40732
UniRef90 UniRef90_Q4K834

Product

Feature Type CDS
Coding Frame 1
Product Name
bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase
Synonyms
Evidence for Translation
Charge (pH 7) -4.26
Kyte-Doolittle Hydrophobicity Value 0.075
Molecular Weight (kDa) 43361.2
Isoelectric Point (pI) 6.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 639 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000862 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_4515

Human Homologs

Ensembl 110, assembly GRCh38.p14
ornithine aminotransferase [Source:HGNC Symbol;Acc:HGNC:8091]
E-value: 1.4e-60
Percent Identity: 34.8

References

No references are associated with this feature.