Pseudomonas protegens Pf-5, PFL_5490

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5490
Name
Replicon chromosome
Genomic location 6265620 - 6266555 (- strand)

Cross-References

RefSeq YP_262558.1
GI 70732794
Entrez 3479881
INSDC AAY94699.1
NCBI Locus Tag PFL_5490
UniParc UPI000054E045
UniProtKB Acc Q4K5C5
UniProtKB ID Q4K5C5_PSEF5
UniRef100 UniRef100_Q4K5C5
UniRef50 UniRef50_Q4K5C5
UniRef90 UniRef90_Q4K5C5

Product

Feature Type CDS
Coding Frame 1
Product Name
NAD dependent epimerase/dehydratase
Synonyms
Evidence for Translation
Charge (pH 7) -5.40
Kyte-Doolittle Hydrophobicity Value 0.075
Molecular Weight (kDa) 34070.8
Isoelectric Point (pI) 5.67

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 629 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005000 (390 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5490

Human Homologs

Ensembl 97, assembly GRCh38.p12
GDP-mannose 4,6-dehydratase [Source:HGNC Symbol;Acc:HGNC:4369]
E-value: 4.3e-10
Percent Identity: 26.2

References

No references are associated with this feature.