Pseudomonas protegens Pf-5, PFL_5494

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5494
Name
Replicon	chromosome
Genomic location	6271922 - 6273289 (- strand)

Cross-References

RefSeq	YP_262562.1
GI	70732797
Entrez	3479884
INSDC	AAY94702.1
NCBI Locus Tag	PFL_5494
UniParc	UPI000054E049
UniProtKB Acc	Q4K5C1
UniProtKB ID	Q4K5C1_PSEF5
UniRef100	UniRef100_Q4K5C1
UniRef50	UniRef50_A0A078KWT9
UniRef90	UniRef90_Q4K5C1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-9.53
Kyte-Doolittle Hydrophobicity Value	0.052
Molecular Weight (kDa)	49966.6
Isoelectric Point (pI)	4.87

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001312 (602 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5494 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000269081 ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30] E-value: 1.5e-18 Percent Identity: 29.2
Ensembl 110, assembly GRCh38.p14	ENSP00000509702 ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30] E-value: 1.5e-18 Percent Identity: 29.2

References