Pseudomonas protegens Pf-5, PFL_5693 (bioB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5693
Name
bioB
Replicon chromosome
Genomic location 6488307 - 6489362 (- strand)

Cross-References

RefSeq YP_262751.2
GI 161501959
EC Number 2.8.1.6
Entrez 3480065
INSDC AAY94883.2
NCBI Locus Tag PFL_5693
UniParc UPI000160BD5F
UniProtKB Acc Q4K4T2
UniProtKB ID BIOB_PSEF5
UniRef100 UniRef100_Q4K4T2
UniRef50 UniRef50_A6W0Y1
UniRef90 UniRef90_Q88A98

Product

Feature Type CDS
Coding Frame 1
Product Name
biotin synthase
Synonyms
Evidence for Translation
Charge (pH 7) -9.77
Kyte-Doolittle Hydrophobicity Value -0.222
Molecular Weight (kDa) 38.8
Isoelectric Point (pI) 5.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 476 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000487 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5693
Search term: bioB
Search term: biotin synthase

Human Homologs

References

No references are associated with this feature.