Pseudomonas protegens Pf-5, PFL_5723 (fdhA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5723
Name
fdhA
Replicon chromosome
Genomic location 6519911 - 6521110 (- strand)

Cross-References

RefSeq YP_262781.1
GI 70733008
EC Number 1.2.1.46
Entrez 3480095
INSDC AAY94913.1
NCBI Locus Tag PFL_5723
UniParc UPI000054E116
UniProtKB Acc Q4K4Q2
UniProtKB ID Q4K4Q2_PSEF5
UniRef100 UniRef100_Q4K4Q2
UniRef50 UniRef50_Q52078
UniRef90 UniRef90_P46154

Product

Feature Type CDS
Coding Frame 1
Product Name
formaldehyde dehydrogenase
Synonyms
Evidence for Translation
Charge (pH 7) -2.08
Kyte-Doolittle Hydrophobicity Value 0.028
Molecular Weight (kDa) 42066.9
Isoelectric Point (pI) 6.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
1KOL OXIDOREDUCTASE 12/21/01 Crystal structure of formaldehyde dehydrogenase Pseudomonas putida 1.65 X-RAY DIFFRACTION 95.2
4JLW OXIDOREDUCTASE 03/13/13 Crystal structure of formaldehyde dehydrogenase from Pseudomonas aeruginosa Pseudomonas aeruginosa 2.7 X-RAY DIFFRACTION 90.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 533 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003315 (1429 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5723
Search term: fdhA

Human Homologs

References

No references are associated with this feature.