Pseudomonas protegens Pf-5, PFL_5772 (dbpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5772
Name
dbpA
Replicon chromosome
Genomic location 6576787 - 6578172 (+ strand)

Cross-References

RefSeq YP_262830.1
GI 70733057
EC Number 3.6.1.-
Entrez 3480144
INSDC AAY94962.1
NCBI Locus Tag PFL_5772
UniParc UPI000054E147
UniProtKB Acc Q4K4K3
UniProtKB ID Q4K4K3_PSEF5
UniRef100 UniRef100_Q4K4K3
UniRef50 UniRef50_P21693
UniRef90 UniRef90_Q4K4K3

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7) 5.47
Kyte-Doolittle Hydrophobicity Value -0.049
Molecular Weight (kDa) 50.0
Isoelectric Point (pI) 8.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 612 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000446 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5772
Search term: dbpA

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2

References

No references are associated with this feature.