Pseudomonas protegens Pf-5, PFL_5817 (mdcD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5817
Name
mdcD
Replicon chromosome
Genomic location 6623647 - 6624498 (- strand)

Cross-References

RefSeq YP_262875.1
GI 70733102
EC Number 4.1.-.-
Entrez 3480189
INSDC AAY95007.1
NCBI Locus Tag PFL_5817
UniParc UPI000054E174
UniProtKB Acc Q4K4F8
UniProtKB ID Q4K4F8_PSEF5
UniRef100 UniRef100_Q4K4F8
UniRef50 UniRef50_Q4K4F8
UniRef90 UniRef90_Q4K4F8

Product

Feature Type CDS
Coding Frame 1
Product Name
malonate decarboxylase subunit beta
Synonyms
Evidence for Translation
Charge (pH 7) -7.57
Kyte-Doolittle Hydrophobicity Value 0.030
Molecular Weight (kDa) 30199.0
Isoelectric Point (pI) 4.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 556 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000210 (479 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5817
Search term: mdcD

Human Homologs

References

No references are associated with this feature.