Pseudomonas protegens Pf-5, PFL_6086 (tssA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6086
Name
tssA
Replicon chromosome
Genomic location 6912942 - 6913961 (+ strand)

Cross-References

RefSeq YP_263144.2
GI 346643327
Entrez 3480456
INSDC AAY95274.2
NCBI Locus Tag PFL_6086
UniParc UPI00021A0109
UniProtKB Acc Q4K3N9
UniProtKB ID Q4K3N9_PSEF5
UniRef100 UniRef100_Q4K3N9
UniRef50 UniRef50_Q4K3N9
UniRef90 UniRef90_Q4K3N9

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein TssA
Synonyms
Evidence for Translation
Charge (pH 7) -20.85
Kyte-Doolittle Hydrophobicity Value -0.237
Molecular Weight (kDa) 36251.0
Isoelectric Point (pI) 4.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 79 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000081 (1178 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6086
Search term: tssA

Human Homologs

References

No references are associated with this feature.