Pseudomonas protegens CHA0, PFLCHA0_c01620 (ydgA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c01620
Name
ydgA
Replicon chromosome
Genomic location 187359 - 188861 (+ strand)

Cross-References

RefSeq YP_007997468.1
GI 501677642
Entrez 15558078
NCBI Locus Tag PFLCHA0_c01620

Product

Feature Type CDS
Coding Frame 1
Product Name
protein YdgA
Synonyms
Evidence for Translation
Charge (pH 7) -12.77
Kyte-Doolittle Hydrophobicity Value -0.091
Molecular Weight (kDa) 53569.5
Isoelectric Point (pI) 4.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 39 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015310 (212 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c01620
Search term: ydgA
Search term: protein YdgA

Human Homologs

References

No references are associated with this feature.