Pseudomonas protegens CHA0, PFLCHA0_c13420 (rapA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c13420
Name
rapA
Replicon chromosome
Genomic location 1497247 - 1500096 (- strand)

Cross-References

RefSeq YP_007998636.1
GI 501678810
EC Number 3.6.4.-
Entrez 15559258
NCBI Locus Tag PFLCHA0_c13420

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase-associated protein RapA
Synonyms
Evidence for Translation
Charge (pH 7) -50.59
Kyte-Doolittle Hydrophobicity Value -0.270
Molecular Weight (kDa) 106.4
Isoelectric Point (pI) 4.67

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 315 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002310 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c13420
Search term: rapA

Human Homologs

Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 21.7
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 21.7
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 21.7
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 21.7
Ensembl 110, assembly GRCh38.p14
chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
E-value: 1.1e-07
Percent Identity: 21.7

References

No references are associated with this feature.