Pseudomonas protegens CHA0, PFLCHA0_c19970 (topA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c19970
Name
topA
Replicon chromosome
Genomic location 2216294 - 2218906 (+ strand)

Cross-References

RefSeq YP_007999282.1
GI 501679456
EC Number 5.99.1.2
Entrez 15559913
NCBI Locus Tag PFLCHA0_c19970

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA topoisomerase
Synonyms
Evidence for Translation
Charge (pH 7) 9.49
Kyte-Doolittle Hydrophobicity Value -0.561
Molecular Weight (kDa) 96.9
Isoelectric Point (pI) 8.33

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 665 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002571 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c19970
Search term: topA
Search term: DNA topoisomerase

Human Homologs

References

No references are associated with this feature.