Pseudomonas protegens CHA0, PFLCHA0_c21340 (rtcB1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas protegens CHA0
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c21340
Name
rtcB1
Replicon chromosome
Genomic location 2353319 - 2354452 (- strand)

Cross-References

RefSeq YP_007999410.1
GI 501679584
Entrez 15560050
NCBI Locus Tag PFLCHA0_c21340

Product

Feature Type CDS
Coding Frame 1
Product Name
RtcB protein RtcB
Synonyms
Evidence for Translation
Charge (pH 7) 2.67
Kyte-Doolittle Hydrophobicity Value -0.257
Molecular Weight (kDa) 41230.5
Isoelectric Point (pI) 7.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 339 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005013 (316 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c21340
Search term: rtcB1
Search term: RtcB protein RtcB

Human Homologs

Ensembl 97, assembly GRCh38.p12
RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:HGNC:26935]
E-value: 6.8e-26
Percent Identity: 26.2

References

No references are associated with this feature.