Pseudomonas protegens CHA0, PFLCHA0_c28410 (ycaO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c28410
Name
ycaO
Replicon chromosome
Genomic location 3127267 - 3129486 (- strand)

Cross-References

RefSeq YP_008000115.1
GI 501680289
Entrez 15560757
NCBI Locus Tag PFLCHA0_c28410

Product

Feature Type CDS
Coding Frame 1
Product Name
protein YcaO
Synonyms
Evidence for Translation
Charge (pH 7) -53.62
Kyte-Doolittle Hydrophobicity Value -0.203
Molecular Weight (kDa) 82849.5
Isoelectric Point (pI) 4.23

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 119 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001160 (843 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c28410
Search term: ycaO
Search term: protein YcaO

Human Homologs

References

No references are associated with this feature.