Pseudomonas protegens CHA0, PFLCHA0_c34470 (tlrC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c34470
Name
tlrC
Replicon chromosome
Genomic location 3856110 - 3857750 (+ strand)

Cross-References

RefSeq YP_008000721.1
GI 501680895
Entrez 15561363
NCBI Locus Tag PFLCHA0_c34470

Product

Feature Type CDS
Coding Frame 1
Product Name
tylosin resistance ATP-binding protein TlrC
Synonyms
Evidence for Translation
Charge (pH 7) 0.89
Kyte-Doolittle Hydrophobicity Value -0.179
Molecular Weight (kDa) 59066.6
Isoelectric Point (pI) 7.10

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001345 (417 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c34470
Search term: tlrC

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72]
E-value: 4.8e-32
Percent Identity: 28.1
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily F member 3 [Source:HGNC Symbol;Acc:HGNC:72]
E-value: 4.8e-32
Percent Identity: 28.1

References

No references are associated with this feature.