Pseudomonas protegens CHA0, PFLCHA0_c43270 (ttdR4)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c43270
Name
ttdR4
Replicon chromosome
Genomic location 4905282 - 4906232 (+ strand)

Cross-References

RefSeq YP_008001590.1
GI 501681764
Entrez 15562243
NCBI Locus Tag PFLCHA0_c43270

Product

Feature Type CDS
Coding Frame 1
Product Name
HTH-type transcriptional activator TtdR
Synonyms
Evidence for Translation
Charge (pH 7) 2.58
Kyte-Doolittle Hydrophobicity Value 0.065
Molecular Weight (kDa) 34.2
Isoelectric Point (pI) 7.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 406 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002720 (467 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c43270
Search term: ttdR4

Human Homologs

References

No references are associated with this feature.