Pseudomonas protegens CHA0, PFLCHA0_c50280 (oprD13)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas protegens CHA0
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c50280
Name
oprD13
Replicon chromosome
Genomic location 5634614 - 5635939 (+ strand)

Cross-References

RefSeq YP_008002281.1
GI 501682455
EC Number 3.4.21.-
Entrez 15562944
NCBI Locus Tag PFLCHA0_c50280

Product

Feature Type CDS
Coding Frame 1
Product Name
porin D
Synonyms
Evidence for Translation
Charge (pH 7) -5.84
Kyte-Doolittle Hydrophobicity Value -0.420
Molecular Weight (kDa) 48310.2
Isoelectric Point (pI) 5.84

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 21 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000160 (448 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c50280
Search term: oprD13
Search term: porin D

Human Homologs

References

No references are associated with this feature.