Pseudomonas protegens CHA0, PFLCHA0_c57260 (dbpA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c57260
Name
dbpA
Replicon chromosome
Genomic location 6370628 - 6372013 (+ strand)

Cross-References

RefSeq YP_008002958.1
GI 501683132
EC Number 3.6.4.13
Entrez 15563643
NCBI Locus Tag PFLCHA0_c57260

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-independent RNA helicase DbpA
Synonyms
Evidence for Translation
Charge (pH 7) 5.47
Kyte-Doolittle Hydrophobicity Value -0.049
Molecular Weight (kDa) 50.0
Isoelectric Point (pI) 8.38

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 612 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000446 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c57260
Search term: dbpA

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2
Ensembl 110, assembly GRCh38.p14
DEAD-box helicase 42 [Source:HGNC Symbol;Acc:HGNC:18676]
E-value: 1.4e-61
Percent Identity: 42.2

References

No references are associated with this feature.