Pseudomonas protegens CHA0, PFLCHA0_c60460
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
GCF_000397205.1|latest |
| Locus Tag |
PFLCHA0_c60460
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 6707715 - 6708230 (+ strand) |
Cross-References
| RefSeq | YP_008003278.1 |
| GI | 501683452 |
| Entrez | 15563963 |
| NCBI Locus Tag | PFLCHA0_c60460 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
hypothetical protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -4.76 |
| Kyte-Doolittle Hydrophobicity Value | -0.202 |
| Molecular Weight (kDa) | 18.7 |
| Isoelectric Point (pI) | 4.73 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 5N8N | STRUCTURAL PROTEIN | 02/23/17 | Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 94.6 |
| 4UQZ | PROTEIN TRANSPORT | 06/25/14 | Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes | PSEUDOMONAS AERUGINOSA PAO1 | 1.599 | X-RAY DIFFRACTION | 93.4 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 106 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000082 (1260 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c60460
|
Human Homologs
References
No references are associated with this feature.