Pseudomonas protegens CHA0, PFLCHA0_c61280 (vdlD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas protegens CHA0
GCF_000397205.1|latest
Locus Tag
PFLCHA0_c61280
Name
vdlD
Replicon chromosome
Genomic location 6798866 - 6799351 (+ strand)

Cross-References

RefSeq YP_008003360.1
GI 501683534
Entrez 15564045
NCBI Locus Tag PFLCHA0_c61280

Product

Feature Type CDS
Coding Frame 1
Product Name
protein VdlD
Synonyms
Evidence for Translation
Charge (pH 7) 2.65
Kyte-Doolittle Hydrophobicity Value -0.386
Molecular Weight (kDa) 18.2
Isoelectric Point (pI) 8.68

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 351 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005057 (550 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLCHA0_c61280
Search term: vdlD
Search term: protein VdlD

Human Homologs

Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4
Ensembl 97, assembly GRCh38.p12
acyl-CoA thioesterase 7 [Source:HGNC Symbol;Acc:HGNC:24157]
E-value: 4.1e-12
Percent Identity: 32.4

References

No references are associated with this feature.