Pseudomonas denitrificans ATCC 13867, H681_07905 (rumA)

Gene Feature Overview

Strain	Pseudomonas denitrificans ATCC 13867 GCF_000349845.1|latest
Locus Tag	H681_07905
Name	rumA
Replicon	chromosome
Genomic location	1723076 - 1724428 (+ strand)

Cross-References

RefSeq	YP_007656997.1
GI	472324751
Entrez	14995715
INSDC	AGI23457.1
NCBI Locus Tag	H681_07905
UniParc	UPI0002C4F782
UniProtKB Acc	M4WXI3
UniProtKB ID	M4WXI3_PSEDE
UniRef100	UniRef100_M4WXI3
UniRef50	UniRef50_Q4K898
UniRef90	UniRef90_M4WXI3

Product

Feature Type	CDS
Coding Frame	1
Product Name	23S rRNA m(5)U1939 methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7)	3.18
Kyte-Doolittle Hydrophobicity Value	-0.104
Molecular Weight (kDa)	48763.3
Isoelectric Point (pI)	7.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 554 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000899 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: H681_07905 Search term: rumA Search term: 23S rRNA m(5)U1939 methyltransferase

Human Homologs

References