Pseudomonas denitrificans ATCC 13867, H681_08175
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest |
| Locus Tag |
H681_08175
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 1777137 - 1777598 (+ strand) |
Cross-References
| RefSeq | YP_007657051.1 |
| GI | 472324805 |
| Entrez | 14995769 |
| NCBI Locus Tag | H681_08175 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
redox-sensitive transcriptional activator SoxR
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 3.80 |
| Kyte-Doolittle Hydrophobicity Value | -0.473 |
| Molecular Weight (kDa) | 16865.0 |
| Isoelectric Point (pI) | 8.51 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| Pseudomonas aeruginosa soxR | SoxR is a redox-sensitive transcriptional activator that induces expression of a small regulon that includes the RND efflux pump-encoding operon mexGHI-opmD. SoxR was shown to be activated by pyocyanin. [PMID:15845502, PMID:16879411, PMID:27274079] | ARO:3004107 | protein homolog model | Strict | 240.4 | 82.01 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 293 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003220 (458 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: H681_08175
Search term: redox-sensitive transcriptional activator SoxR
|
Human Homologs
References
No references are associated with this feature.