Pseudomonas denitrificans ATCC 13867, H681_10670

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas denitrificans ATCC 13867
GCF_000349845.1|latest
Locus Tag
H681_10670
Name
Replicon chromosome
Genomic location 2326426 - 2327481 (+ strand)

Cross-References

RefSeq YP_007657546.1
GI 472325300
Entrez 14996264
INSDC AGI24006.1
NCBI Locus Tag H681_10670
UniParc UPI0002C4DD89
UniProtKB Acc M4WXR0
UniProtKB ID M4WXR0_PSEDE
UniRef100 UniRef100_M4WXR0
UniRef50 UniRef50_P13794
UniRef90 UniRef90_P13794

Product

Feature Type CDS
Coding Frame 1
Product Name
Major porin and structural outer membrane porin OprF precursor
Synonyms
Evidence for Translation
Charge (pH 7) -10.68
Kyte-Doolittle Hydrophobicity Value -0.440
Molecular Weight (kDa) 37548.3
Isoelectric Point (pI) 4.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5U1H PEPTIDE BINDING PROTEIN 11/28/16 Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.5 X-RAY DIFFRACTION 96.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 446 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003618 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: H681_10670

Human Homologs

References

No references are associated with this feature.