Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA0576
|
Name |
rpoD
Synonym: rpoDA |
Replicon | chromosome |
Genomic location | 634371 - 636224 (- strand) |
RefSeq | NP_249267.1 |
GI | 15595773 |
Affymetrix | PA0576_rpoD_at |
Entrez | 882038 |
GenBank | AAG03965.1 |
INSDC | AAG03965.1 |
NCBI Locus Tag | PA0576 |
protein_id(GenBank) | gb|AAG03965.1|AE004494_1|gnl|PseudoCAP|PA0576 |
TIGR | NTL03PA00577 |
UniParc | UPI0000134834 |
UniProtKB Acc | P26480 |
UniProtKB ID | RPOD_PSEAE |
UniRef100 | UniRef100_P26480 |
UniRef50 | UniRef50_P26480 |
UniRef90 | UniRef90_P26480 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
sigma factor RpoD
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected using LC-MS/MS (69.64 kDa, PMID:21751344)
|
Charge (pH 7) | -31.01 |
Kyte-Doolittle Hydrophobicity Value | -0.593 |
Molecular Weight (kDa) | 69.6 |
Isoelectric Point (pI) | 4.62 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7XYA | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loading complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.3 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 590 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG000559 (535 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA0576
Search term: rpoD
Search term: sigma factor RpoD
|
Cloning and analysis of the gene (rpoDA) for the principal sigma factor of Pseudomonas aeruginosa.
Tanaka K, Takahashi H
Biochim Biophys Acta 1991 May 2;1089(1):113-9
PubMed ID: 1902749
|
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344
|