Pseudomonas aeruginosa PAO1, PA3601 (rpmE2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3601
Name
rpmE2
Synonym: ykgM
Replicon chromosome
Genomic location 4035758 - 4036021 (- strand)
Transposon Mutants 1 transposon mutants in PAO1
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq NP_252291.1
GI 15598797
Affymetrix PA3601_at
DNASU PaCD00007576
Entrez 880137
GenBank AAG06989.1
INSDC AAG06989.1
NCBI Locus Tag PA3601
protein_id(GenBank) gb|AAG06989.1|AE004780_8|gnl|PseudoCAP|PA3601
TIGR NTL03PA03601
UniParc UPI0000132FA5
UniProtKB Acc Q9HY25
UniProtKB ID RL31B_PSEAE
UniRef100 UniRef100_B7V9F6
UniRef50 UniRef50_Q7NA98
UniRef90 UniRef90_B7V9F6

Product

Feature Type CDS
Coding Frame 1
Product Name
RpmE2
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 3.18
Kyte-Doolittle Hydrophobicity Value -0.616
Molecular Weight (kDa) 9.5
Isoelectric Point (pI) 9.41

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 375 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002073 (927 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3601
Search term: rpmE2
Search term: RpmE2

Human Homologs

References

Zinc-responsive regulation of alternative ribosomal protein genes in Streptomyces coelicolor involves zur and sigmaR.
Owen GA, Pascoe B, Kallifidas D, Paget MS
J Bacteriol 2007 Jun;189(11):4078-86
PubMed ID: 17400736