Pseudomonas aeruginosa PAO1, PA3744 (rimM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3744
Name
rimM
Replicon chromosome
Genomic location 4196165 - 4196692 (- strand)

Cross-References

RefSeq NP_252433.1
GI 15598939
Affymetrix PA3744_rimM_at
DNASU PaCD00007634
Entrez 880358
GenBank AAG07131.1
INSDC AAG07131.1
NCBI Locus Tag PA3744
protein_id(GenBank) gb|AAG07131.1|AE004793_8|gnl|PseudoCAP|PA3744
TIGR NTL03PA03744
UniParc UPI0000133914
UniProtKB Acc Q9HXQ0
UniProtKB ID RIMM_PSEAE
UniRef100 UniRef100_Q9HXQ0
UniRef50 UniRef50_Q9HXQ0
UniRef90 UniRef90_Q9HXQ0

Product

Feature Type CDS
Coding Frame 1
Product Name
16S rRNA processing protein
Product Name Confidence: Class 2
Synonyms RimM
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -8.37
Kyte-Doolittle Hydrophobicity Value -0.263
Molecular Weight (kDa) 19.8
Isoelectric Point (pI) 4.62

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2F1L UNKNOWN FUNCTION 11/14/05 CRYSTAL STRUCTURE OF A PUTATIVE 16S RIBOSOMAL RNA PROCESSING PROTEIN RIMM (PA3744) FROM PSEUDOMONAS AERUGINOSA AT 2.46 A RESOLUTION Pseudomonas aeruginosa 2.46 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 469 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001938 (537 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3744
Search term: rimM

Human Homologs

References

The nucleotide sequence of an Escherichia coli operon containing genes for the tRNA(m1G)methyltransferase, the ribosomal proteins S16 and L19 and a 21-K polypeptide.
Byström AS, Hjalmarsson KJ, Wikström PM, Björk GR
EMBO J 1983;2(6):899-905
PubMed ID: 6357787
RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli.
Bylund GO, Wipemo LC, Lundberg LA, Wikström PM
J Bacteriol 1998 Jan;180(1):73-82
PubMed ID: 9422595