Pseudomonas aeruginosa PAO1, PA3968

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3968
Name
Synonym: ymfC
Replicon chromosome
Genomic location 4446425 - 4446994 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_252657.1
GI 15599163
Affymetrix PA3968_at
Entrez 878864
GenBank AAG07355.1
INSDC AAG07355.1
NCBI Locus Tag PA3968
protein_id(GenBank) gb|AAG07355.1|AE004814_10|gnl|PseudoCAP|PA3968
TIGR NTL03PA03968
UniParc UPI00000C5BA4
UniProtKB Acc Q9HX48
UniProtKB ID RLUE_PSEAE
UniRef100 UniRef100_Q9HX48
UniRef50 UniRef50_Q9HX48
UniRef90 UniRef90_Q9HX48

Product

Feature Type CDS
Coding Frame 1
Product Name
probable pseudouridine synthase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 4.48
Kyte-Doolittle Hydrophobicity Value -0.508
Molecular Weight (kDa) 21.5
Isoelectric Point (pI) 10.29

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 579 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001711 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3968

Human Homologs

References

No references are associated with this feature.