Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4238
|
Name |
rpoA
|
Replicon | chromosome |
Genomic location | 4754423 - 4755424 (- strand) |
RefSeq | NP_252928.1 |
GI | 15599434 |
Affymetrix | PA4238_rpoA_at |
DNASU | PaCD00007837 |
Entrez | 881813 |
GenBank | AAG07626.1 |
INSDC | AAG07626.1 |
NCBI Locus Tag | PA4238 |
protein_id(GenBank) | gb|AAG07626.1|AE004841_4|gnl|PseudoCAP|PA4238 |
TIGR | NTL03PA04239 |
UniParc | UPI00001346AC |
UniProtKB Acc | O52760 |
UniProtKB ID | RPOA_PSEAE |
UniRef100 | UniRef100_A6UZL3 |
UniRef50 | UniRef50_Q4K557 |
UniRef90 | UniRef90_Q4K557 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
DNA-directed RNA polymerase alpha chain
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected using LC-MS/MS (36.65 kDa, PMID:21751344)
|
Charge (pH 7) | -15.59 |
Kyte-Doolittle Hydrophobicity Value | -0.249 |
Molecular Weight (kDa) | 36.6 |
Isoelectric Point (pI) | 4.62 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7XL4 | TRANSCRIPTION | 04/21/22 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes with transcription factor SutA (closed lobe) | Pseudomonas aeruginosa PAO1 | 3.86 | ELECTRON MICROSCOPY | 100.0 |
7VF9 | TRANSCRIPTION | 09/10/21 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes | Pseudomonas aeruginosa PAO1 | 4.04 | ELECTRON MICROSCOPY | 100.0 |
7XYA | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loading complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.3 | ELECTRON MICROSCOPY | 100.0 |
7F0R | TRANSCRIPTION/DNA | 06/06/21 | Cryo-EM structure of Pseudomonas aeruginosa SutA transcription activation complex | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT | 5.8 | ELECTRON MICROSCOPY | 100.0 |
7XL3 | TRANSCRIPTION | 04/21/22 | Cryo-EM structure of Pseudomonas aeruginosa RNAP sigmaS holoenzyme complexes with transcription factor SutA (open lobe) | Pseudomonas aeruginosa PAO1 | 3.13 | ELECTRON MICROSCOPY | 100.0 |
7XYB | TRANSCRIPTION | 06/01/22 | The cryo-EM structure of an AlpA-loaded complex | Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT | 3.7 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 589 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001472 (536 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4238
Search term: rpoA
Search term: DNA-directed RNA polymerase alpha chain
|
Proteomic analysis of outer membrane vesicles derived from Pseudomonas aeruginosa.
Choi DS, Kim DK, Choi SJ, Lee J, Choi JP, Rho S, Park SH, Kim YK, Hwang D, Gho YS
Proteomics 2011 Aug;11(16):3424-9
PubMed ID: 21751344
|