Pseudomonas aeruginosa PAO1, PA5337 (rpoZ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Reference)
GCF_000006765.1|latest
Locus Tag
PA5337
Name
rpoZ
Replicon chromosome
Genomic location 6005899 - 6006165 (+ strand)
Transposon Mutants 1 transposon mutants in PAO1

Cross-References

RefSeq NP_254024.1
GI 15600530
Affymetrix PA5337_rpoZ_at
DNASU PaCD00008307
Entrez 878048
GenBank AAG08722.1
INSDC AAG08722.1
NCBI Locus Tag PA5337
protein_id(GenBank) gb|AAG08722.1|AE004946_6|gnl|PseudoCAP|PA5337
TIGR NTL03PA05338
UniParc UPI0000134801
UniProtKB Acc Q9HTM1
UniProtKB ID RPOZ_PSEAE
UniRef100 UniRef100_A6VEE4
UniRef50 UniRef50_Q5E8P6
UniRef90 UniRef90_A6VEE4

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase omega subunit
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -11.03
Kyte-Doolittle Hydrophobicity Value -0.309
Molecular Weight (kDa) 9.8
Isoelectric Point (pI) 3.95

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 245 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004906 (553 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5337
Search term: rpoZ

Human Homologs

References

The spoU gene of Escherichia coli, the fourth gene of the spoT operon, is essential for tRNA (Gm18) 2'-O-methyltransferase activity.
Persson BC, Jäger G, Gustafsson C
Nucleic Acids Res. 1997 Oct;25(20):4093-7
PubMed ID: 9321663