Motif View

Internal ID 17653629
Source Database TransTermHP TERM 2
Feature Type terminator
Name
Rho-independent transcription terminator TERM 2
Sequence CGGGGGCGTCGAAGCCCCCG
Look for more occurrences
Start 9057
End 9076
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCGCGGAGCAGAA(5' tail) CGGGGGC(5' stem) GTCGAA(loop) GCCCCCG(3' stem) TTTTCGTTCATGGCT(3' tail). Confidence: 100. opp_overlap 9057

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685