Motif View

Internal ID 17654199
Source Database TransTermHP TERM 986
Feature Type terminator
Name
Rho-independent transcription terminator TERM 986
Sequence GCCCATCTGCAAGATGGGC
Look for more occurrences
Start 5010645
End 5010663
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGGAAATGAAAAA(5' tail) GCCCATCT(5' stem) TGC(loop) AGATGGGC(3' stem) TTAAGTCATTGATTT(3' tail). Confidence: 100. opp_overlap 5010638 5010645

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685