Motif View

Internal ID 17654200
Source Database TransTermHP TERM 987
Feature Type terminator
Name
Rho-independent transcription terminator TERM 987
Sequence CCCCCGGCCTGAAAAACCGGGGG
Look for more occurrences
Start 5014579
End 5014601
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCGGCAAAGAAAAA(5' tail) CCCCCGG(5' stem) TTTTTCAGG(loop) CCGGGGG(3' stem) TTCGTTCGTCACTCG(3' tail). Confidence: 100. opp_overlap 5014579, overlap 5014573

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685