Motif View

Internal ID 17655489
Source Database TransTermHP TERM 1482
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1482
Sequence GCCCCACCGGATGGTGGGGC
Look for more occurrences
Start 5849368
End 5849387
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CACGCTCGTCTCTCG(5' tail) GCCCCACC(5' stem) GGAT(loop) GGTGGGGC(3' stem) TTTTTTTGCCTGCCT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685