Motif View

Internal ID 17658500
Source Database TransTermHP TERM 123
Feature Type terminator
Name
Rho-independent transcription terminator TERM 123
Sequence TGTGCATGGCCTTTTAATATAAAAGGCCATGAGCA
Look for more occurrences
Start 549257
End 549291
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTGTCCAGGTTAAA(5' tail) TGCTCATGGCCTTTTA(5' stem) TAT(loop) TAAAAGGCCATGCACA(3' stem) TTGAATATGCCCACT(3' tail). Confidence: 95. opp_overlap 549257

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685