Motif View

Internal ID 17659394
Source Database TransTermHP TERM 92
Feature Type terminator
Name
Rho-independent transcription terminator TERM 92
Sequence GAGGCCGTTCCTCGAAGGCAGGGAGTGGCCTC
Look for more occurrences
Start 345069
End 345100
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae B728a chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGTGATTTTTATTA(5' tail) GAGGCCGTTCCTCG(5' stem) AAGG(loop) CAGGGAGTGGCCTC(3' stem) TTTTTTTGTCTGTCA(3' tail). Confidence: 100. opp_overlap 345071

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685