Motif View

Internal ID 17660745
Source Database TransTermHP TERM 659
Feature Type terminator
Name
Rho-independent transcription terminator TERM 659
Sequence GCCTGGCGCAACATAGTGTGCGCCAGGC
Look for more occurrences
Start 2666549
End 2666576
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAAAATAGTAAAAA(5' tail) GCCTGGCGC-ACA(5' stem) CTA(loop) TGTTGCGCCAGGC(3' stem) CTGCTAGAGCGGGCG(3' tail). Confidence: 100. gap 1, overlap 2666564

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685