Motif View

Internal ID 17661105
Source Database TransTermHP TERM 1232
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1232
Sequence CCTCTTGCAGGCCACGGGGGGCGTGGCTTGCGAGGTG
Look for more occurrences
Start 5370946
End 5370982
Strand -
Genomic Context
Replicon Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCAAAAAACACACAA(5' tail) CACCTCGCAAGCCACG(5' stem) CCCCC(loop) CGTGGCCTGCAAGAGG(3' stem) TTCTCCAAGGGTTAT(3' tail). Confidence: 93. opp_overlap 5370948 5370948, overlap 5370941 5370939 5370948 5370949

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685