Motif View

Internal ID 17661212
Source Database TransTermHP TERM 9
Feature Type terminator
Name
Rho-independent transcription terminator TERM 9
Sequence GCCGGCTCCTACGGGGGAGCCGGC
Look for more occurrences
Start 49502
End 49525
Strand -
Genomic Context
Replicon Pseudomonas protegens Pf-5 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCCCGCAGTAAAAA(5' tail) GCCGGCTCCC(5' stem) CCGT(loop) AGGAGCCGGC(3' stem) TTGCCGGCGAAGCGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685