Motif View

Internal ID 17665690
Source Database TransTermHP TERM 170
Feature Type terminator
Name
Rho-independent transcription terminator TERM 170
Sequence CGAGACGGGGAGGCGTAAAGCCTCCCCGGTTCG
Look for more occurrences
Start 539392
End 539424
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCTAAGCTGATTCT(5' tail) CGAGACGGGGAGGC(5' stem) GTAAA(loop) GCCTCCCCGGTTCG(3' stem) TTTATGGAAACCACA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685