Motif View

Internal ID 17666829
Source Database TransTermHP TERM 1653
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1653
Sequence GGCCAGCCTGATGCGCTGGCC
Look for more occurrences
Start 5266644
End 5266664
Strand +
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCTACAGTAAAAA(5' tail) GGCCAGC(5' stem) CTGATGC(loop) GCTGGCC(3' stem) TTTTTCTTGCCTGCG(3' tail). Confidence: 100. opp_overlap 5266644, overlap 5266638

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685