Motif View

Internal ID 17666991
Source Database TransTermHP TERM 1852
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1852
Sequence CGCCGCGACTGTTCGCGGCG
Look for more occurrences
Start 5817376
End 5817395
Strand -
Genomic Context
Replicon Pseudomonas fluorescens Pf0-1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACTTACAACGAAAAA(5' tail) CGCCGCGA(5' stem) ACAG(loop) TCGCGGCG(3' stem) TCTGGCAAAGCGCGG(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685