Motif View

Internal ID 17669075
Source Database TransTermHP TERM 335
Feature Type terminator
Name
Rho-independent transcription terminator TERM 335
Sequence GGCGCTGATGACATCATCGGCGCC
Look for more occurrences
Start 1277425
End 1277448
Strand +
Genomic Context Located within gene [PSEBR_a1006]
Replicon Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGTGTCTCCAGGAT(5' tail) GGCGCTGATG(5' stem) ACAT(loop) CATCGGCGCC(3' stem) TTCTGCACCGATGGC(3' tail). Confidence: 95. opp_overlap 1277438 1277441, overlap 1277436 1277444

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685