Motif View

Internal ID 17669889
Source Database TransTermHP TERM 1473
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1473
Sequence CGCCCCCGGTGCCACGCGCCGGGGGTG
Look for more occurrences
Start 6704935
End 6704961
Strand +
Genomic Context
Replicon Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGTGTAATCGAACA(5' tail) CGCCCCCGGTGC(5' stem) CAC(loop) GCGCCGGGGGTG(3' stem) TTTGGTGCTTGCTCG(3' tail). Confidence: 100. opp_overlap 6704935 6704933

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685