Motif View

Internal ID 17671626
Source Database TransTermHP TERM 1098
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1098
Sequence CCGGCTTAGGCCGG
Look for more occurrences
Start 4121893
End 4121906
Strand -
Genomic Context
Replicon Pseudomonas mendocina NK-01 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACATCCAAGAAAAAA(5' tail) CCGGC(5' stem) CTAA(loop) GCCGG(3' stem) TTTTTCATGTAGCAC(3' tail). Confidence: 100. opp_overlap 4121893, overlap 4121886

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685