Motif View

Internal ID 17672864
Source Database TransTermHP TERM 1403
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1403
Sequence CGCCCCCGGTGCCAGGCGCCGGGGGTG
Look for more occurrences
Start 6684895
End 6684921
Strand +
Genomic Context
Replicon Pseudomonas fluorescens F113 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGTGTAATCGAACA(5' tail) CGCCCCCGGTGC(5' stem) CAG(loop) GCGCCGGGGGTG(3' stem) TTTGGTGCTTGCTCG(3' tail). Confidence: 100. opp_overlap 6684893 6684895, overlap 6684903

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685