Motif View

Internal ID 17676594
Source Database TransTermHP TERM 20
Feature Type terminator
Name
Rho-independent transcription terminator TERM 20
Sequence CGGCGACCTTCGGGTCGCCG
Look for more occurrences
Start 81501
End 81520
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa DK2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCCCCTCAACGAAA(5' tail) CGGCGACC(5' stem) CGAA(loop) GGTCGCCG(3' stem) TCGCGTTCGTGCCGG(3' tail). Confidence: 93. opp_overlap 81496

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685