Motif View

Internal ID 17678185
Source Database TransTermHP TERM 936
Feature Type terminator
Name
Rho-independent transcription terminator TERM 936
Sequence TGAAAAAGCCCGCGTTTGCGGGCTTTTTCG
Look for more occurrences
Start 4183736
End 4183765
Strand -
Genomic Context
Replicon Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATGCAGCGCAGAAA(5' tail) CGAAAAAGCCCGC(5' stem) AAAC(loop) GCGGGCTTTTTCA(3' stem) TGTCCGATCGATCAA(3' tail). Confidence: 100. opp_overlap 4183743, overlap 4183737 4183743

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685